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1

A tomato NBS-LRR gene is positively involved in plant resistance to Phytophthora infestans

Jiang, Ning, Cui, Jun, Meng, Jun, Luan, Yushi

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.76 MB

english, 2018

2

Identification of lncRNAs and their regulatory relationships with target genes and corresponding miRNAs in melon response to powdery mildew fungi

Zhou, Xiaoxu, Cui, Jun, Cui, Haonan, Jiang, Ning, Hou, Xinxin, Liu, Shi, Gao, Peng, Luan, Yushi, Meng, Jun, Luan, Feishi

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2020

3

PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction

Kang, Qiang, Meng, Jun, Cui, Jun, Luan, Yushi, Chen, Ming, Robinson, Peter

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 505 KB

english, 2020

4

Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans

Jiang, Ning, Meng, Jun, Cui, Jun, Sun, Guangxin, Luan, Yushi

Journal:

Horticulture Research

Année:

2018

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2018

5

Identification and characterization of defensin genes conferring Phytophthora infestans resistance in tomato

Cui, Jun, Jiang, Ning, Meng, Jun, Hou, Xinxin, Yang, Guanglei, Luan, Yushi

Journal:

Physiological and Molecular Plant Pathology

Année:

2018

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2018

6

Tomato MYB49 enhances resistance to Phytophthora infestans and tolerance to water deficit and salt stress

Cui, Jun, Jiang, Ning, Zhou, Xiaoxu, Hou, Xinxin, Yang, Guanglei, Meng, Jun, Luan, Yushi

Journal:

Année:

2018

Fichier:

PDF, 7.85 MB

2018

7

Tomato MYB49 enhances resistance to Phytophthora infestans and tolerance to water deficit and salt stress

Cui, Jun, Jiang, Ning, Zhou, Xiaoxu, Hou, Xinxin, Yang, Guanglei, Meng, Jun, Luan, Yushi

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 7.85 MB

english, 2018

8

Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction

Jiang, Ning, Cui, Jun, Shi, Yunsheng, Yang, Guanglei, Zhou, Xiaoxu, Hou, Xinxin, Meng, Jun, Luan, Yushi

Journal:

Horticulture Research

Année:

2019

Fichier:

PDF, 1.38 MB

2019

9

Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction

Jiang, Ning, Cui, Jun, Shi, Yunsheng, Yang, Guanglei, Zhou, Xiaoxu, Hou, Xinxin, Meng, Jun, Luan, Yushi

Journal:

Horticulture Research

Année:

2019

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2019

10

Genome-wide Identification of LncRNAs and Analysis of CeRNA Networks during Tomato Resistance to Phytophthora infestans

Cui, Jun, Jiang, Ning, Hou, Xinxin, Wu, Sihan, Zhang, Qiang, Meng, Jun, Luan, Yushi

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2019

11

Genome-wide identification, characterization and expression analysis of the TLP gene family in melon (Cucumis melo L.)

Liu, Yarong, Cui, Jun, Zhou, Xiaoxu, Luan, Yushi, Luan, Feishi

Journal:

Année:

2020

Fichier:

PDF, 4.90 MB

2020

12

Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon

Wang, Zhicheng, Luan, Yushi, Zhou, Xiaoxu, Cui, Jun, Luan, Feishi, Meng, Jun

Journal:

Briefings in Bioinformatics

Année:

2020

Fichier:

PDF, 3.24 MB

2020

13

Sequence and structure prediction of RNA-dependent RNA polymerase of lily symptomless virus isolated fromL. × ‘Casablanca’

Pinsan Xu, Huangai Li, Jiwen Liu, Yushi Luan, Yalei Yin, Jianfang Bai

Journal:

Archives of Virology

Année:

2011

Langue:

english

Fichier:

PDF, 357 KB

english, 2011

14

Arbuscular mycorrhizae formed byPenicillium pinophilumimprove the growth, nutrient uptake and photosynthesis of strawberry with two inoculum-types

Yongqiang Fan, Yushi Luan, Lijia An, Kun Yu

Journal:

Biotechnology Letters

Année:

2008

Langue:

english

Fichier:

PDF, 305 KB

english, 2008

15

Cell culture induced introgression of Thinopyrum intermedium chromatin into common wheat

Bao Liu, Yushi Luan, Fangpu Han, Wanquan Ji, Mengyuan He

Journal:

Plant Cell, Tissue and Organ Culture

Année:

2001

Langue:

english

Fichier:

PDF, 277 KB

english, 2001

16

Prediction and validation of potential pathogenic microRNAs involved inPhytophthora infestansinfection

Cui, Juanjuan, Luan, Yushi, Wang, Weichen, Zhai, Junmiao

Journal:

Molecular Biology Reports

Année:

2014

Langue:

english

Fichier:

PDF, 569 KB

english, 2014

17

Analysis on nutrients of sweetpotato leaf as functional food

Shi, Jin, Luan, Yushi, Wang, Jingyun, An, Lijia

Journal:

Journal of Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 73 KB

english, 2008

18

Identification and functional analysis of novel and conserved microRNAs in tomato

Luan, Yushi, Wang, Weichen, Liu, Ping

Journal:

Molecular Biology Reports

Année:

2014

Langue:

english

Fichier:

PDF, 735 KB

english, 2014

19

Gene selection using rough set based on neighborhood for the analysis of plant stress response

Meng, Jun, Zhang, Jing, Li, Rui, Luan, Yushi

Journal:

Applied Soft Computing

Année:

2014

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2014

20

[IEEE 2013 IEEE International Conference on Granular Computing (GrC) - TBD, China (2013.12.13-2013.12.15)] 2013 IEEE International Conference on Granular Computing (GrC) - Protein function prediction based on physiochemical properties and protein granularity

Wang, Wanlu, Zhang, Xin, Meng, Jun, Luan, Yushi

Année:

2013

Langue:

english

Fichier:

PDF, 713 KB

english, 2013

21

High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated withPhytophthora infestans

Luan, Yushi, Cui, Jun, Zhai, Junmiao, Li, Jie, Han, Lu, Meng, Jun

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2015

22

The advance of tomato disease-related microRNAs

Wang, Weichen, Luan, Yushi

Journal:

Plant Cell Reports

Année:

2015

Langue:

english

Fichier:

PDF, 447 KB

english, 2015

23

Gene Selection Integrated with Biological Knowledge for Plant Stress Response Using Neighborhood System and Rough Set Theory

Meng, Jun, Zhang, Jing, Luan, Yushi

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 438 KB

english, 2015

24

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine

Meng, Jun, Liu, Dong, Sun, Chao, Luan, Yushi

Journal:

BMC Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2014

25

Classification by integrating plant stress response gene expression data with biological knowledge

Meng, Jun, Li, Rui, Luan, Yushi

Journal:

Mathematical Biosciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2015

26

Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility toPhytophthora nicotianaeinfection in transgenic tobacco

Chen, Lei, Luan, Yushi, Zhai, Junmiao

Journal:

Plant Cell Reports

Année:

2015

Langue:

english

Fichier:

PDF, 5.89 MB

english, 2015

27

Expression of a tomato MYB gene in transgenic tobacco increases resistance toFusarium oxysporumandBotrytis cinerea

Liu, Zhen, Luan, Yushi, Li, Jingbin, Yin, Yali

Journal:

European Journal of Plant Pathology

Année:

2016

Langue:

english

Fichier:

PDF, 2.55 MB

english, 2016

28

Surgical versus medical treatment for children with epileptic encephalopathy in infancy and early childhood: Results of an international multicenter cohort study in Far-East Asia (the FACE study)

Otsuki, Taisuke, Kim, Heung-Dong, Luan, Guoming, Inoue, Yushi, Baba, Hiroshi, Oguni, Hirokazu, Hong, Seung-Chyul, Kameyama, Shigeki, Kobayashi, Katsuhiro, Hirose, Shinichi, Yamamoto, Hitoshi, Hamano,

Journal:

Brain and Development

Année:

2015

Langue:

english

Fichier:

PDF, 509 KB

english, 2015

29

Classifier ensemble selection based on affinity propagation clustering

Meng, Jun, Hao, Han, Luan, Yushi

Journal:

Journal of Biomedical Informatics

Année:

2016

Langue:

english

Fichier:

PDF, 1023 KB

english, 2016

30

Inferring plant microRNA functional similarity using a weighted protein-protein interaction network

Meng, Jun, Liu, Dong, Luan, Yushi

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2015

31

MiR1918 enhances tomato sensitivity to Phytophthora infestans infection

Luan, Yushi, Cui, Jun, Wang, Weichen, Meng, Jun

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2016

32

Homologous gene targeting of a carotenoids biosynthetic gene inRhodosporidium toruloidesbyAgrobacterium-mediated transformation

Sun, Wenyi, Yang, Xiaobing, Wang, Xueying, Lin, Xinping, Wang, Yanan, Zhang, Sufang, Luan, Yushi, Zhao, Zongbao K.

Journal:

Biotechnology Letters

Année:

2017

Langue:

english

Fichier:

PDF, 777 KB

english, 2017

33

Effective enhancement of resistance to Phytophthora infestans by overexpression of miR172a and b in Solanum lycopersicum

Luan, Yushi, Cui, Jun, Li, Jie, Jiang, Ning, Liu, Ping, Meng, Jun

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.74 MB

english, 2017

34

MicroRNA396a-5p and -3p induce tomato disease susceptibility by suppressing target genes and upregulating salicylic acid

Chen, Lei, Meng, Jun, Zhai, Junmiao, Xu, Pinsan, Luan, Yushi

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2017

35

Transcriptome signatures of tomato leaf induced by Phytophthora infestans and functional identification of transcription factor SpWRKY3

Cui, Jun, Xu, Pinsan, Meng, Jun, Li, Jingbin, Jiang, Ning, Luan, Yushi

Journal:

Theoretical and Applied Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2017

36

Developing a flippase-mediated maker recycling protocol for the oleaginous yeast Rhodosporidium toruloides

Sun, Wenyi, Yang, Xiaobing, Wang, Xueying, Jiao, Xiang, Zhang, Sufang, Luan, Yushi, Zhao, Zongbao K.

Journal:

Biotechnology Letters

Année:

2018

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2018

37

Analyses of microbial community of naturally homemade soybean pastes in Liaoning Province of China by Illumina Miseq Sequencing

Sun, Xiaodong, Lyu, Guozhong, Luan, Yushi, Zhao, Zhihui, Yang, Hong, Su, Dan

Journal:

Food Research International

Année:

2018

Langue:

english

Fichier:

PDF, 2.93 MB

english, 2018

38

Plant microRNA-Target Interaction Identification Model Based on the Integration of Prediction Tools and Support Vector Machine

Meng, Jun, Shi, Lin, Luan, Yushi, Gupta, Dinesh

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 879 KB

english, 2014

39

Molecular characterization of a cryptic wheat-Thinopyrum intermedium translocation line: evidence for genomic instability in nascent allopolyploid and aneuploid lines

Yingshan, Dong, Xiuling, Bu, Yushi, Luan, Mengyuan, He, Bao, Liu

Journal:

Genetics and Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 104 KB

english, 2004

40

Comparative transcriptome analysis shows the defense response networks regulated by miR482b

Jiang, Ning, Cui, Jun, Yang, Guanglei, He, Xiaoli, Meng, Jun, Luan, Yushi

Journal:

Plant Cell Reports

Année:

2018

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2018

41

SpWRKY6 acts as a positive regulator during tomato resistance to Phytophthora infestans infection

Hong, Yuhui, Cui, Jun, Liu, Zhen, Luan, Yushi

Journal:

Biochemical and Biophysical Research Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2018

42

LncRNA33732- RESPIRATORY BURST OXIDASE module associated with WRKY1 in tomato- Phytophthora infestans interactions

Cui, Jun, Jiang, Ning, Meng, Jun, Yang, Guanglei, Liu, Weiwei, Zhou, Xiaoxu, Ma, Ning, Hou, Xinxin, Luan, Yushi

Journal:

The Plant Journal

Année:

2018

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2018

43

miR1916 plays a role as a negative regulator in drought stress resistance in tomato and tobacco

Chen, Lei, Meng, Jun, Luan, Yushi

Journal:

Biochemical and Biophysical Research Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2018

44

Metabolomic study of the soybean pastes fermented by the single species Penicillium glabrum GQ1-3 and Aspergillus oryzae HGPA20

Sun, Xiaodong, Lyu, Guozhong, Luan, Yushi, Yang, Hong, Zhao, Zhihui

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2019

45

A Hybrid Prediction Method for Plant lncRNA-Protein Interaction

Wekesa, Jael Sanyanda, Luan, Yushi, Chen, Ming, Meng, Jun

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2019

46

Ensemble classification for gene expression data based on parallel clustering

Meng, Jun, Jiang, Dingling, Zhang, Jing, Luan, Yushi

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 915 KB

english, 2018

47

Plant miRNA–lncRNA Interaction Prediction with the Ensemble of CNN and IndRNN

Zhang, Peng, Meng, Jun, Luan, Yushi, Liu, Chanjuan

Journal:

Interdisciplinary Sciences: Computational Life Sciences

Année:

2019

Fichier:

PDF, 1.10 MB

2019

48

LncRNA39026 enhances tomato resistance to Phytophthora infestans by decoying miR168a and inducing PR genes expression

Hou, Xinxin, Cui, Jun, Liu, Weiwei, Jiang, Ning, Zhou, Xiaoxu, Qi, Hongyan, Meng, Jun, Luan, Yushi

Journal:

Année:

2019

Fichier:

PDF, 2.99 MB

2019

49

Predicting Protein Functions Based on Differential Co-expression and Neighborhood Analysis

Wekesa, Jael Sanyanda, Luan, Yushi, Meng, Jun

Journal:

Journal of Computational Biology

Année:

2020

Fichier:

PDF, 814 KB

2020

50

A deep learning model for plant lncRNA-protein interaction prediction with graph attention

Wekesa, Jael Sanyanda, Meng, Jun, Luan, Yushi

Journal:

Molecular Genetics and Genomics

Année:

2020

Fichier:

PDF, 1.30 MB

2020